Transfer color and opacity look up tables from one volume to another using machine learning

Live 3D Slicer scenes on the web — render MRML/MRB scenes in the browser, no install

Live in-browser 3D Slicer scenes — pieper.github.io/live

Desktop Integration for Healthcare Providers and Researchers

vast.ai GPU desktop streamed to the browser over QUIC/WebTransport — a modern noVNC

GrandQC tool for tissue detection and quality control in pathology

Full head segmentation

Recommended MGB Open Science Licenses

Bring the capabilities of 3D Slicer to the web with modern UI using the trame framework!

This project provides the infrastructure to build dcmqi Python wheels.

A Zarr-based imaging file format with lovely nested semantics

An experimental dependency checker

Fast, scalable whole-slide tiling

VIBESegmentator: Full Torso Segmentation for the NAKO and UK Biobank in Volumetric Interpolated Breath-hold Examination Body Images

SKILLS.md style information for slicer programing and usage

Interactive network visualization of tumor-level similarity between 289 NLST lung cancer patients, comparing embeddings from 9 foundation models applied to tumor regions defined by NLST-Sybil annot…

Write professional-grade skills for agents, validate them using LLMs, and maintain a lean context window.

Manual for PET SUV Computation and Digital Reference Objects for its Verification

Public repository for Agent Skills

SKILLS.md style information for slicer programing and usage

Tutorials to help you get started applying TIAToolbox to IDC data

A curated list of awesome Claude Skills, resources, and tools for customizing Claude AI workflows

Julia library for radiomics

Repo for Better Code, Better Science book

Tools for comparing the results of AI segmentation.

A Claude skill for exploring cancer imaging data from the Imaging Data Commons (IDC)

Natural language interface to NCI Imaging Data Commons

AGENTS.md — a simple, open format for guiding coding agents