Skip to content
View fedarko's full-sized avatar

Organizations

@marbl @knightlab-analyses

Block or report fedarko

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
Showing results

A lightweight and elegant JavaScript color picker. Written in vanilla ES6, no dependencies. Accessible.

JavaScript 591 69 Updated Sep 12, 2025

A tiny color picker custom element for modern web apps (2.7 KB) 🎨

TypeScript 849 30 Updated Sep 6, 2024

ripgrep recursively searches directories for a regex pattern while respecting your gitignore

Rust 63,149 2,531 Updated Feb 27, 2026

Approximate UniFrac via Weighted MinHash 🦀

Rust 5 Updated Apr 5, 2026

Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement

Perl 84 10 Updated Dec 3, 2025

A Tiny WebGL helper Library

JavaScript 2,976 261 Updated Oct 13, 2025

A visualization grammar and GPU-accelerated toolkit for genomic data

JavaScript 191 11 Updated Apr 30, 2026

CGView.js creates interactive circular and linear genome maps.

JavaScript 46 3 Updated Apr 10, 2026
Shell 2 Updated Nov 11, 2024

Find and decompose genomic variation sites in pangenome graphs

C++ 12 1 Updated Apr 30, 2026

To turn the exploration of graph genomes into an immersive, interactive, and usable iVR experience, we built a new VR application which we call "The Immersive Graph Genome Explorer" (IGGE). IGGE is…

3 Updated Apr 11, 2021

TIPP3 and TIPP3-fast: new phylogeny-based metagenomic profiling and taxonomic identification tool.

Python 4 Updated Apr 1, 2026

MetaCompass: Reference-guided Assembly of Metagenomes

Python 43 12 Updated Apr 13, 2026

python version of raincloud

Jupyter Notebook 320 60 Updated Oct 6, 2025

Aggregate genome coverage

Python 11 6 Updated Oct 12, 2025

Automagic Python Bindings for the Open Graph Drawing Framework

Python 21 2 Updated Mar 13, 2026

Pan-genome inference and genotyping with long noisy or short accurate reads

C++ 120 15 Updated Dec 13, 2024

Tools for working with agp files

Python 19 3 Updated Jun 26, 2025

Python interface to Graphviz graph drawing package

Python 841 225 Updated Apr 27, 2026

The Dagre layout for DAGs and trees for Cytoscape.js

JavaScript 277 80 Updated Apr 27, 2026

Quickly and accurately render even the largest data.

Python 3,541 376 Updated Apr 23, 2026

Interactive network visualization in Python and Dash, powered by Cytoscape.js

Python 673 123 Updated Aug 9, 2025

Recognizing HGT Events in Assemblies

Python 10 Updated Sep 29, 2025

oxford dot plots

Python 170 13 Updated Apr 21, 2026

The world's first (and hopefully last) pure-bash implementation of the LLL algorithm

Shell 19 Updated Aug 21, 2023

A metagenome assembly and evaluation pipeline, focused on hi-fi long reads, but with support for lo-fi long reads and hybrid assemblies

Jupyter Notebook 10 1 Updated Mar 18, 2026

Sequence and structure homology of proteins involved in microbial polyphosphate cycling

Jupyter Notebook 2 Updated Oct 5, 2023

Experimental utilities for LRS

Python 1 Updated Sep 10, 2025

Toolkit for processing sequences in FASTA/Q formats

C 1,539 328 Updated Jun 1, 2025

FizzBuzz Enterprise Edition is a no-nonsense implementation of FizzBuzz made by serious businessmen for serious business purposes.

Java 23,633 805 Updated Jul 15, 2024
Next