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adjusted-typhoid-incidence Public
Forked from mailephillips/adjusted-typhoid-incidenceR UpdatedJan 29, 2025 -
ubinfie.github.io Public
Forked from ubinfie/ubinfie.github.ioµbinfie blog
HTML Creative Commons Zero v1.0 Universal UpdatedJan 28, 2025 -
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seqbox Public
Forked from meta00/seqboxlocal sequence management lightweight tools
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bactopia Public
Forked from bactopia/bactopiaA flexible pipeline for complete analysis of bacterial genomes
Nextflow MIT License UpdatedSep 29, 2022 -
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genotyphi Public
Forked from typhoidgenomics/genotyphiAssign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)
Python GNU General Public License v3.0 UpdatedNov 11, 2021 -
Salmonella_Isangi_Analysis_pipeline Public
Forked from MalcolmorianVII/Isangi_pipelineBioinformatics pipelines for Salmonella_Isangi genomics analysis
HTML UpdatedJul 9, 2021 -
nanostat Public
Forked from wdecoster/nanostatCreate statistic summary of an Oxford Nanopore read dataset
Python GNU General Public License v3.0 UpdatedJan 8, 2021 -
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yamyam Public
Yet another mnemonic for yet another (typing) method
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sra_upload Public
Package to write XML for uploading to NCBI
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query_ena_api Public
Small script to take an ENA accession and return the ERR
Python MIT License UpdatedOct 2, 2020 -
parse_kraken2_report Public
Taxonomically informed parsing of kraken2 report output.
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postcode_to_constituency Public
Quick hacky bit of code to convert postcode to UK electoral constituency.
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gemucator Public
Forked from philipwfowler/gemucatorGenbank Mutation Locator: give it a mutation and it will tell you the location in the reference genome (and vice versa)
Python MIT License UpdatedJul 10, 2019 -
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Materials for bioinformatics training at Oxford University Clinical Research Unit
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Mykrobe-predictor Public
Forked from iqbal-lab/Mykrobe-predictorAntibiotic resistance predictions in minutes on a laptop
Python Other UpdatedAug 30, 2018 -
tb_cartogram Public
A cartogram of estimated number of incident cases (all forms) of TB from WHO stats
GNU General Public License v3.0 UpdatedAug 3, 2018 -
git_training Public
Forked from tmaunier/git_trainingGit training repository - OUCRU Modelling and Stat teams
R UpdatedJul 31, 2018 -
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sublime_blast Public
BLAST within sublime text
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