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Publication-ready visualization of overlays of imagery and segmentation from cloudvolume data
Alignment to Median Smoothed Template for FIB-SEM data
python driver to control MPDSnCxx AOTF devices
Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with outputs of any 2D segmentation method.
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
DeepSeek LLM: Let there be answers
NASA Data Acquisition System (NDAS) is an integrated suite of applications that manage the complete data acquisition lifecycle—from acquisition, processing, and calibration to display, recording, a…
This is where the code for the NANOmi open source electron microscope lives.
Micro-Manager's device control layer, written in C++
GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets
Scripts and notebooks for annotation and handling of phase and fluorescent data for preparation and training of neural networks for event detection.
Modular metal lathe made of CNC and 3D-printed parts
Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
Qwen3-VL is the multimodal large language model series developed by Qwen team, Alibaba Cloud.
This repository is for the openFrame microscope and supporting projects
The instrument control for the HexSIM system based on the GUI frame work of ScopeFoundry.
Use the Illumina HiSeq 2000/2500 as an epifluorescence microscope with fluidics control.
Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
Manual, source-code and binaries for the NanoJ-Fluidics project