Search results

[Bug] subprocess.CalledProcessError: Command '.julia/bin/baysor run --polygon-format GeometryCollection -c config.toml transcripts.csv :sopa_prior' returned non-zero exit status 1.

Status: Open.

#372 In gustaveroussy/sopa;

· 16nikita opened on Dec 19, 2025

segmentation combine between two spatialdata objects

Status: Open.

#369 In gustaveroussy/sopa;

· PietroD opened on Dec 16, 2025

[Feature] Add numpy array mask from external tool to sopa's spatialdata

Status: Open.

#361 In gustaveroussy/sopa;

· PietroD opened on Dec 2, 2025

Issue CosMx reader and polygons

Status: Open.

#357 In gustaveroussy/sopa;

· ccruizm opened on Nov 21, 2025

[Feature] Experiment different filtering parameters during aggregation

Status: Open.

#355 In gustaveroussy/sopa;

· quentinblampey opened on Nov 14, 2025

[Feature] Support zarr v3 and unpinning dask

Status: Open.

#347 In gustaveroussy/sopa;

· quentinblampey opened on Nov 4, 2025

[Feature] Singular g4x support

Status: Open.

#339 In gustaveroussy/sopa;

· derrik-gratz opened on Oct 20, 2025

[Feature] Nimbus model support

Status: Open.

#337 In gustaveroussy/sopa;

· Mr-Milk opened on Oct 13, 2025

Can sopa take as input COMET data ?

Status: Open.

#331 In gustaveroussy/sopa;

· reJELIN opened on Oct 6, 2025

[Bug] Aggregation bins no overlap

Status: Open.

#318 In gustaveroussy/sopa;

· revalescente opened on Sep 16, 2025

[Bug] Local run looking for conda activate (I use uv)

Status: Open.

#317 In gustaveroussy/sopa;

· josenimo opened on Sep 15, 2025

Xenium Explorer Conversion Issue

Status: Open.

#304 In gustaveroussy/sopa;

· hallumg opened on Aug 28, 2025