Power analyses for cell morphology readouts

A conda-smithy repository for cytominer_database.

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

Docker image for downloading IDR datasets

Data processing for the Cell Painting data from the Cell Health experiments

Written lab policies and standards often read when joining the lab!

Predicting Cell Health with Morphological Profiles

Scraping Gene Ontology for standardized organelle terms and IDs

Homepage for all happenings in the Way Lab at CU Anschutz

Processed Cell Painting Data for the LINCS Drug Repurposing Project

Benchmarking a metric used to evaluate a perturbation strength

🛠️ Use me to version control Pooled Cell Painting data and processing pipelines

Common Evaluation Metrics for DataFrames

Template repository for image-based profiling of Pooled Cell Painting experiments

Code for Dharia NV, et al. A First-Generation Pediatric Cancer Dependency Map. Nature Genetics 2021.

Example pipelines for training purposes

A package for storing morphological profiling data.

Scripts to backup data for the Imaging Platform

Morphological profiling using deep learning

Assigning biological knowledge to compressed gene expression features

Software to classify biological phenotypes from single-cell image-based morphology profiles

Cell image classsification with neural networks (MLP, ConvNet) and other statistical ML models (SVM, LDA, LR, etc.).

a free, open-source web app for annotating, training, and evaluating image understanding algorithms

Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs