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nf1_cellpainting_data Public
Forked from WayScience/nf1_schwann_cell_painting_dataThis repository contains all the modules to perform image-based analysis with CellProfiler on NF1 Schwann cell data.
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedOct 26, 2025 -
CPBS7601 Public
Forked from WayScience/CPBS7601Course on computing skills in bioinformatics
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedOct 20, 2025 -
NF1_SchwannCell_data_analysis Public
Forked from WayScience/nf1_schwann_cell_morphology_signatureJupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedJul 21, 2025 -
fibrolytix-bio-website Public
Forked from FibrolytixBio/fibrolytix-bio-websiteWebsite for Fibrolytix Bio!
TypeScript UpdatedJul 4, 2025 -
CytoTable Public
Forked from cytomining/CytoTableTransform data for processing image-based profiling readouts with Pycytominer.
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 19, 2025 -
pycytominer Public
Forked from cytomining/pycytominercytominer python package
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 11, 2025 -
pediatric_cancer_atlas_profiling Public
Forked from WayScience/pediatric_cancer_atlas_profilingImage analysis and image-based profiling of pediatic cancer cell lines to extract morphological profiles.
Jupyter Notebook Creative Commons Zero v1.0 Universal UpdatedMay 29, 2025 -
Phenotypic_severity_and_variance Public
Forked from WayScience/Phenotypic_severity_and_varianceQuantifying Zebrafish opercle bone morphology
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedDec 6, 2024 -
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CFReT_data Public
Data processing for CFReT pilot images.
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pycytominer-feedstock Public
Forked from conda-forge/pycytominer-feedstockA conda-smithy repository for pycytominer.
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Cytotoxic-Nuisance-Metadata-Analysis Public
Forked from WayScience/predicting-cell-injury-compoundsProcessing cell-injury profiles using Pycytominer to generate selected features profiles for training a multi-class regression model to identify cellular injury.
Jupyter Notebook Creative Commons Attribution 4.0 International UpdatedSep 17, 2024 -
phenotypic_profiling_model Public
Forked from WayScience/phenotypic_profilingTraining and validating ML model using data from https://github.com/WayScience/mitocheck_data
Jupyter Notebook Creative Commons Attribution 4.0 International UpdatedSep 16, 2024 -
JUMP-single-cell Public
Forked from WayScience/JUMP-single-cellSingle cell analysis of the JUMP Cell Painting consortium data
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedMar 13, 2024 -
IC_Test Public
Forked from WayScience/MIICEThis repository holds all of the research and code used to develop IC Test.
Python Creative Commons Zero v1.0 Universal UpdatedJan 26, 2024 -
.github-cytomining Public
Forked from cytomining/.githubA special GitHub repository for setting the Cytomining organization profile and default community health files.
BSD 3-Clause "New" or "Revised" License UpdatedJan 12, 2024 -
mitocheck_data Public
Forked from WayScience/mitocheck_dataAll information regarding the download and processing of Mitocheck data from IDR study with accession idr0013 (screenA).
Jupyter Notebook Creative Commons Zero v1.0 Universal UpdatedSep 18, 2023 -
CytoSnake Public
Forked from WayScience/CytoSnakeThis is not a pipe
Python Creative Commons Attribution 4.0 International UpdatedJul 19, 2023 -
2018_05_30_ResistanceMechanisms_Kapoor Public
Forked from broadinstitute/profiling-resistance-mechanismsPredicting pharmacodynamic responses to cancer drugs using cell morphology
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedJul 19, 2023 -
gene_dependency_representations Public
Forked from WayScience/gene-process-dependenciesJupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedJun 28, 2023 -
drug_viability_data Public
Forked from WayScience/drug_viability_dataExploring large-scale drug viability datasets
Jupyter Notebook Creative Commons Zero v1.0 Universal UpdatedApr 14, 2023 -
jump-datasets Public
Forked from jump-cellpainting/datasetsImages and other data from the JUMP Cell Painting Consortium
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedMar 27, 2023 -
NF1_SchwannCell_data Public
Forked from WayScience/Benchmarking_NF1_dataData processing for NF1 Schwann cell pilot images.
Jupyter Notebook Creative Commons Zero v1.0 Universal UpdatedMar 16, 2023 -
Interstellar_Project Public
Forked from WayScience/pyroptosis_signature_image_profilingThis repository contains the pipelines used to analyze the data sets from the Interstellar collaboration.
Jupyter Notebook Creative Commons Zero v1.0 Universal UpdatedFeb 23, 2023 -
MNIST_TD-VAE Public
Forked from WayScience/MNIST_TD-VAETemporal Difference Variational Auto-Encoder (TD-VAE) (Implementation in PyTorch)
Python UpdatedFeb 19, 2023 -
OpenPBTA-manuscript Public
Forked from AlexsLemonade/OpenPBTA-manuscriptThe manuscript repository for the Open Pediatric Brain Tumor Atlas Project
HTML Other UpdatedJan 6, 2023 -
publicly-available-microscopy-data Public
Forked from WayScience/publicly-available-microscopy-dataCompiling and describing publicly available microscopy datasets
BSD 3-Clause "New" or "Revised" License UpdatedAug 14, 2022 -
lincs-profiling-comparison Public
Forked from broadinstitute/lincs-profiling-complementarityAnalyzing and comparing signal found in different profiling technologies
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedAug 8, 2022 -
cell-morphology-power-analyses Public
Forked from WayScience/cell-morphology-power-analysesPower analyses for cell morphology readouts
BSD 3-Clause "New" or "Revised" License UpdatedJul 15, 2022 -
cytominer_database-feedstock Public
Forked from conda-forge/cytominer_database-feedstockA conda-smithy repository for cytominer_database.
Shell BSD 3-Clause "New" or "Revised" License UpdatedJun 23, 2022
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