Commits

Commits on Jan 16, 2025

modified: mmap_malloc/mmap_allocator.c
galaxy001
committed
b386d9d

Commits on Jan 15, 2025

vector<uint32, galaxy::mmap_allocator<uint32>> countCellGeneUMI
galaxy001
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e6c4e48
Add source/mmap_malloc
galaxy001
committed
665875a
Apply patches/0002-donotuse_own_htslib.patch
galaxy001
committed
4095926

Commits on Feb 24, 2024

When `soloOutFormatFeaturesGeneField3` is `+`, write GeneBiotype as FeaturesGeneField3.
huxs001
committed
5f9b2ea

Commits on Jan 25, 2024

2.7.11b
alexdobin
committed
b1edc12
Ready for 2.7.11b
alexdobin
committed
73eaeb2
Merge branch 'patch-1' of https://github.com/rcannood/STAR
alexdobin
committed
a72e5fa

Commits on Dec 22, 2023

2.7.11a_Diploid_TrSAMfix. Behavior change: replaced --quantTranscriptomeBan option with --quantTranscriptomeSAMoutput option. New option: --quantTranscriptomeSAMoutput BanSingleEnd_ExtendSoftclip :…
alexdobin
committed
326ca13

Commits on Aug 15, 2023

2.7.11a
alexdobin
committed
79affaa
Ready for 2.7.11a
alexdobin
committed
d57f92d

Commits on Aug 8, 2023

Preparing 2.7.11a
alexdobin
committed
826820c
Merged STARdiploid branch.
alexdobin
committed
40a8d6e

Commits on Jul 24, 2023

Issue #1909: Fixed a bug causing wrong sequence length in the UB SAM tag for --soloType CB_UMI_Complex.
alexdobin
committed
148129c

Commits on Jul 19, 2023

2.7.10b_alpha_2023-07-19. Finalized --soloCBtype String option for arbitrary cell barcode strings without passlist.
alexdobin
committed
fdf7a25

Commits on Jul 18, 2023

Implemented option for arbitrary cell barcode strings without passlist.
alexdobin
committed
c087569

Commits on Jul 6, 2023

Added STARsolo BAM tag sF, which outputs the feature type and number of genes for each read.
alexdobin
committed
f31abdf

Commits on Jun 20, 2023

2.7.10b_alpha_23-06-20: Fixed a GstrandBit issue for the on-the-fly insertion of extra genomic sequences.
alexdobin
committed
0299f2b

Commits on Jun 9, 2023

Commits on May 2, 2023

Fixed haplotype tag (ha) for STARdiploid SAM/BAM output.
alexdobin
committed
0628ce5

Commits on Mar 24, 2023

Fixed issues with 2-pass and WASP for diploid genome mapping.
alexdobin
committed
f7b9edd

Commits on Mar 9, 2023

Fixed primary flag for diploid transformation.
alexdobin
committed
74d65f6

Commits on Mar 8, 2023

Finalizing STARdiploid.
alexdobin
committed
b4ea237

Commits on Mar 1, 2023

2.7.10b_alpha_230301: Issue #1763: Fixed a bug causing segnmentation fault in rare cases for 2-pass mapping.
alexdobin
committed
45fe3dd

Commits on Jan 11, 2023

2.7.10b_alpha_220111: Issue #1733: Fixed the issue with counting of intronicAS reads in STARsolo CellReads.stats output with --soloFeatures GeneFull_Ex50pAS option.
alexdobin
committed
f4fa8e8

Commits on Dec 12, 2022

fix more typos
rcannood
authored
80125eb

Commits on Nov 22, 2022

fix typos and uniformise
rcannood
authored
1d19930
further clean up file
rcannood
authored
3c17f0b

Commits on Nov 21, 2022

standardise parameter format
rcannood
authored
fed056b

Commits on Nov 1, 2022

2.7.10b
alexdobin
committed
9ec8b7e

Commits on Oct 20, 2022

Ready for 2.7.10b
alexdobin
committed
c6f8efc
Rearranged collapseUMIall().
alexdobin
committed
6f2442d
renamed: SoloFeature_collapseUMIall_multiMappers.cpp -> SoloFeature_collapseUMIall.cpp
alexdobin
committed
e1a0d39

Commits on Oct 19, 2022

Reduced RAM usage for large STARsolo runs.
alexdobin
committed
e7e8833