Commits

Commits on Sep 22, 2026

Add new relations to embedded RO. (#608)
balhoff
authored
48c9762

Commits on Sep 14, 2026

Better reporting for cascading ShEx violations (#600)
balhoff
authored
c4bf7e1

Commits on Aug 28, 2026

Merge pull request #606 from geneontology/fix-605-tbox-journal-download
kltm
authored
15a3a3a
Fix tbox journal download: use https, fail loudly on a bad artifact

kltm
and
claude
committed
c758e57

Commits on Jul 30, 2026

Make parallel model imports thread-safe (#602)
balhoff
authored
6b4bb11

Commits on Jul 29, 2026

Make unit tests self-contained (#601)

authored
88edba2

Commits on Jul 28, 2026

Add virion component root type (#599)
balhoff
authored
a5a8564

Commits on Jul 1, 2026

Write model files deterministically (#596)

authored
9c441df

Commits on May 27, 2026

Fix GPAD NOT qualifier order (#595)
balhoff
authored
4f29e26

Commits on May 14, 2026

Reject add-edge requests when edge already exists. (#588)

balhoff
and
claude
authored
7a5eb43

Commits on Jan 22, 2026

Remove whitespace from certain GPAD output fields. (#581)
balhoff
authored
4b0ac49

Commits on Jan 13, 2026

Update expected closure size. (#582)
balhoff
authored
bc78722

Commits on Oct 23, 2025

Remove travis link from README.md (#577)
balhoff
authored
6f78386

Commits on Oct 20, 2025

Add 'has substitutable entity' relation. (#575)
balhoff
authored
653d6ea
Bring the ShEx file used in tests up to date. (#576)
balhoff
authored
b3cc37a
Return root types for obsolete GO terms. (#573)
balhoff
authored
f2637e1

Commits on Sep 25, 2025

Add additional property chains for parts of complexes. (#570)
balhoff
authored
5126874

Commits on Aug 22, 2025

Update test for current ontology. (#571)
balhoff
authored
b0a776b

Commits on Aug 12, 2025

Add property chain 'part of' o enables -> 'contributes to'. (#567)
balhoff
authored
9dcab07

Commits on Jul 21, 2025

Use a limited set of RO axioms for inference in producing GPAD output (#561)
balhoff
authored
64b80ea

Commits on Jul 9, 2025

Don't put no-op ontology changes on the undo stack. (#564)
balhoff
authored
475a548
Add organism root type. (#566)
balhoff
authored
4ec93b2

Commits on Jul 6, 2025

Don't allow GO root terms to be extensions. (#563)
balhoff
authored
f604590

Commits on Jun 11, 2025

Commits on Apr 24, 2025

Maintain correct set of in_taxon model annotations. (#504)
balhoff
authored
760f66c

Commits on Apr 17, 2025

Update EcoCyc prefix expansion.
balhoff
committed
a6cda5e

Commits on Mar 11, 2025

Merge pull request #554 from JervenBolleman/GH-553-upgrade-jacoco-maven-plugin
balhoff
authored
0d82ee8

Commits on Mar 10, 2025

GH-553 Upgrade jacoco maven plugin so that test run on jdk21
JervenBolleman
committed
16e54f8

Commits on Feb 26, 2025

Pass provided ontology to command-line JSON dump. (#551)
balhoff
authored
324cc87

Commits on Sep 12, 2024

Output interacting taxon in correct column. (#548)
balhoff
authored
a5021ce

Commits on Jul 25, 2024

Add 'has primary input/output' relations to allowed GPAD extensions (#537)
balhoff
authored
be87c34

Commits on May 15, 2024

Add cli option to allow running checks against a graphstore journal. (#542)
balhoff
authored
dc14000

Commits on May 14, 2024

Fix Biopax URL in test. (#543)
balhoff
authored
61de00c

Commits on Mar 6, 2024

Fix obsolete GO terms in test models. (#538)
balhoff
authored
f66b4bb