Starred repositories
Transformer-based sequence correction method for genome assembly polishing
(Not Offical) BBMap short read aligner, and other bioinformatic tools.
Terminal-based plasmid map viewer, sequence editor, and cloning/mutagenesis workbench in pure Python
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
R script to generate high resolution image of ways to balance a centrifuge
A conda-smithy repository for claude-agent-sdk.
GLLVM Workshop material for the BES 2020 Festival of Ecology
Convert genbank files to a swath of other formats
targetFinder is a tool designed to identify putatively neutral insertion sites in prokaryotes. An algorithm finds convergently described genes with gap sizes within a specified range and looks for …
Translate PDF, EPub, webpage, metadata, annotations, notes to the target language. Support 20+ translate services.
G-code generator for 3D printers (Bambu, Prusa, Voron, VzBot, RatRig, Creality, etc.)
Command-line program to download videos from YouTube.com and other video sites
Quantifying bacterial genomes' gene-content similarity and gene-content-based de-duplication
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
jydu / vcftools
Forked from vcftools/vcftoolsA set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.