IDLI is a computational framework for classification of nucleosomal footprints from SAMOSA data on the basis of shared patterns of intranucleosomal accessibility. In this repository, we share code …

Bioinformatic agent for transcriptomics

Agent skills for Obsidian. Teach your agent to use Obsidian CLI and open formats including Markdown, Bases, JSON Canvas.

Implementation of the Leiden algorithm for various quality functions to be used with igraph in Python.

Skills for Real Engineers. Straight from my .claude directory.

Algebrica is free and open a mathematical knowledge base dedicated to clarity, structure, and conceptual coherence.

Putting tmux on your mobile - Muxile is a tmux plugin that lets you control a running tmux session with your phone, no app needed.

Tmux Plugin Manager

AI-powered IDE for bioinformatics — built by biologists, for biologists

Pre-LLM preflight plugin for Hermes Agent — jabr + muqabalah on pre_llm_call and pre_tool_call hooks. v0.1 PoC.

Genome modeling and design across all domains of life

LLM inference in C/C++

VS Code extension for LLM-assisted code/text completion

The agent harness performance optimization system. Skills, instincts, memory, security, and research-first development for Claude Code, Codex, Opencode, Cursor and beyond.

Build effective agents using Model Context Protocol and simple workflow patterns

Anthropic's educational courses

A collection of notebooks/recipes showcasing some fun and effective ways of using Claude.

Public repository for Agent Skills

🛰️ A CLI tool for tracking token usage from OpenCode, Claude Code, 🦞OpenClaw (Clawdbot/Moltbot), Pi, Codex, Gemini, Cursor, AmpCode, Factory Droid, Kimi, and more! • 🏅Global Leaderboard + 2D/3D Con…

Real-time Claude Code usage monitor with predictions and warnings

Official, Anthropic-managed directory of high quality Claude Code Plugins.

Multi-harness agentic plugin marketplace for Claude Code, Codex CLI, Cursor, OpenCode, GitHub Copilot, and Gemini CLI

Professional Claude Code skills marketplace featuring production-ready skills for enhanced development workflows.

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

Simple simulation of single-cell RNA sequencing data

Persistent Agent Runtime — self-hosted cognitive runtime for AI coding agents: semantic memory, knowledge graph, agent coordination, event-driven workflows, and autonomous self-maintenance via MCP

Give AI agents the ability to edit their own context window

"OpenHarness: Open Agent Harness with a Built-in Personal Agent--Ohmo!"