# site

site_name: GitEHR

site_url: https://gitehr.org/

# repo

repo_url: https://github.com/gitehr/gitehr

repo_name: gitehr/gitehr

edit_uri: edit/main/docs/

nav:

- Home:

- Welcome: index.md

- About:

- The GitEHR Story: about/the-gitehr-story.md

- The Town of SQLby: about/sqlby.md

- Contributors: about/contributors.md

- Acknowledgements: about/acknowledgements.md

- Foundation: about/foundation.md

- Glossary: glossary.md

- References: references/references.md

- Design:

- Overview: design/design.md

- Files, not databases: design/files-not-databases.md

- Common objections: design/common-objections.md

- Patient-mediated extraction: design/patient-mediated-extraction.md

- Open Wearables evaluation: design/open-wearables-evaluation.md

- Patient Centricity: design/patient-centricity.md

- Structure: design/structure.md

- Repository structure: design/repository-structure.md

- Audit Trail: design/audit-trail.md

- Provenance: design/provenance.md

- Forensics: design/forensics.md

- Security: design/security.md

- Redundancy: design/redundancy.md

- Portability: design/portability.md

- No Lock-in: design/no-lock-in.md

- Longevity: design/longevity.md

- Simplicity: design/simplicity.md

- Install:

- Overview: install/install.md

- CLI: install/cli.md

- GUI: install/gui.md

- CLI:

- Overview: cli/cli.md

- store: cli/store.md

- config: cli/config.md

- journal: cli/journal.md

- document: cli/document.md

- import: cli/import.md

- state: cli/state.md

- demographics: cli/demographics.md

- acquisitions: cli/acquisitions.md

- allergies: cli/allergies.md

- conditions: cli/conditions.md

- medications: cli/medications.md

- observations: cli/observations.md

- vaccinations: cli/vaccinations.md

- user: cli/user.md

- remote: cli/remote.md

- status: cli/status.md

- encrypt: cli/encrypt.md

- decrypt: cli/decrypt.md

- transport: cli/transport.md

- gui: cli/gui.md

- upgrade: cli/upgrade.md

- version: cli/version.md

- completions: cli/completions.md

- plugins: cli/plugins.md

- clincalc: cli/clincalc.md

- Developer workflow: cli/developer-workflow.md

- MCP usage: cli/mcp-usage.md

- GUI:

- Overview: gui/gui.md

- Quick start: gui/quick-start.md

- TUI:

- Overview: tui/tui.md

- Safety:

- Overview: safety/safety.md

copyright: >

GitEHR is copyright &copy; 2022-26 Baw Medical Ltd, licensed under <a rel="license" href="https://creativecommons.org/licenses/by-sa/4.0/">CC-BY-SA 4.0</a> (GitEHR concepts and data) or <a rel="license" href="https://www.gnu.org/licenses/agpl-3.0.en.html">AGPL-3.0</a> (GitEHR code).

theme:

variant: modern

logo: assets/images/gitehr-logo.svg

favicon: assets/images/gitehr-logo.svg

features:

- content.action.edit

- content.action.view

- content.code.copy

- content.code.select

- content.code.annotate

- navigation.footer

- navigation.indexes

- navigation.instant

- navigation.sections

- navigation.tabs

- navigation.tabs.sticky

- navigation.top

- navigation.tracking

- toc.follow

palette:

- media: "(prefers-color-scheme: light)"

scheme: default

primary: custom

accent: custom

toggle:

icon: material/toggle-switch-off-outline

name: Switch to dark mode

- media: "(prefers-color-scheme: dark)"

scheme: slate

primary: custom

accent: custom

toggle:

icon: material/toggle-switch

name: Switch to light mode

extra_css:

- stylesheets/extra.css

markdown_extensions:

- abbr

- admonition

- attr_list

- md_in_html

- tables

- toc:

permalink: true

- pymdownx.details

- pymdownx.superfences

- pymdownx.tabbed:

alternate_style: true

- pymdownx.emoji:

emoji_index: !!python/name:zensical.extensions.emoji.twemoji

emoji_generator: !!python/name:zensical.extensions.emoji.to_svg