Stars
A WebGPU-native out-of-core rendering system for large virtualized volumetric data.
Unified API for streaming camera frames to either OME-TIFF or OME-Zarr format
Streaming directly to Zarr on the file system or S3
vivarium-collective / vivatyssue
Forked from DamCB/tyssueAn epithelium simulation library
Tools for uploading an RO-Crate dataset to Omero
A CLI tool to convert between BioImage Archive API objects and RO-crate (specifically include those used in the ome-zarr v4 stastandard).
A CLI plugin for managing the disk space on the OME demo server
Scientific Inkscape: Inkscape extensions for figure resizing and editing
Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
native Python dataclasses for the OME data model
BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
Annotated Research Context - The specification of a general-purpose FAIR digital object
An OMERO CLI plugin for creating transfer packets between OMERO servers.
A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
Impact of size and geometry of 2D epithelial tissues on the precision of gradient sensing via nearest-neighbour or long-range intercellular communication
Web application for managing experimental and environmental metadata for plant experiments
A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by …
Python code to parse a Twitter archive and output in various ways
a high-performance, POSIX-ish Amazon S3 file system written in Go