Clustering scRNAseq by genotypes

PyTorch Lightning Bolts is a toolbox of models, callbacks, and datasets for AI/ML researchers.

Open Targets Genetics GraphQL API

Comprehensive list of color palettes available in r ❤️🧡💛💚💙💜

Deep generative modeling for single-cell omics data

Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data

A grammar of graphics for Python

Filtering of Poison noise on a single-cell RNA-seq UMI count matrix

Variant effect prediction plugin for Kipoi

A Python library of biclustering algorithms, evaluation measures and datasets.

Tensors and Dynamic neural networks in Python with strong GPU acceleration

Single-Cell Analysis in Python. Scales to >1M cells.

Single cell interactive plotting tools

Convert between AnnData and SingleCellExperiment

Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.

SNAP Python code, SWIG related files

Fabia Biclustering Algorithm in Cython

Rectified Factor Networks

Python wrapper for the RFN library.

Differential expression analysis for single-cell RNA-seq data.

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)

Ensemble topic modelling with pLSA

Statistical data visualization using matplotlib

scripts