[tox]

envlist = flake8,py36,py37,py38,py39,mypy,docs

requires = Cython>=0.29.13

[testenv]

deps =

coverage

pytest

pytest-timeout

pytest-mock

setenv = PYTHONDEVMODE = 1

commands =

coverage run -m pytest --doctest-modules --pyargs cutadapt tests

coverage combine

coverage report

coverage xml

[testenv:docs]

basepython = python3.7

changedir = doc

deps =

sphinx

sphinx_issues

commands = sphinx-build -W -b html -d {envtmpdir}/doctrees . {envtmpdir}/html

[testenv:flake8]

basepython = python3.7

deps = flake8

skip_install = true

commands = flake8 src/ tests/

[testenv:mypy]

basepython = python3.7

deps = mypy

commands = mypy src/

[coverage:run]

branch = True

parallel = True

concurrency = multiprocessing

source_pkgs = cutadapt

source = tests

[coverage:paths]

source =

src/

*/site-packages/

[coverage:report]

precision = 1

exclude_lines =

pragma: no cover

def __repr__

[flake8]

max-line-length = 120

max-complexity = 16

select = E,F,W,C90,W504

extend_ignore = E128,E131,W503,E203