A Quarto template for authoring Reveal.js presentations at the University of Luxembourg

Genome-scale metabolic model of the marine bacterium Vibrio natriegens

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

This repository contains data analysis functions related to a study described in the manuscript "An integrated landscape of protein expression in human cancer"

Extract, Retrieve and Predict kcat values for a metabolic model

This project is related with annotations of metabolic reactions

ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints

🕷️ An adaptive Web Scraping framework that handles everything from a single request to a full-scale crawl!

Enzyme-constrained genome-scale models in python

The generic genome-scale metabolic model of Homo sapiens

A 5-20x faster experimental Homebrew alternative

Differentiable constraint-based metabolic models

Visualization of metabolic models in Makie.

attempt at a minimalistic and nice TikZ poster class for #betterposter

📧 Email reply parser library for Python

My Advent of Code solutions

Code for Advent_of_code 2025

R package for DNA methylation analysis

JavaScript Particles in Canvas ~~ Fast, Lightweight, High Performance.

Metabolic feature extraction, enrichment and visualization of transcriptomic data

Unified knowledge-driven network inference from omics data

What should perfect bioinformatic tools be like?

A Python package for "classic" Constraint-Based Reconstruction and Analysis (COBRA) and the new COBRA with kinetics (COBRA-k). Link to documentation and tutorials:

A module to acquire reaction kinetics data from SABIO-RK for any BiGG model

Toolbox for including enzyme constraints on a genome-scale model.