Make Picrust2 Output Analysis and Visualization Easier

Custom-built Qiime2 pipeline for 16S rRNA analysis

16S SNAPP on Python 3

列出了市面上主流的api中转站，及其简单介绍

Local Deep Research achieves ~95% on SimpleQA benchmark (tested with GPT-4.1-mini). Supports local and cloud LLMs (Ollama, Google, Anthropic, ...). Searches 10+ sources - arXiv, PubMed, web, and yo…

分享一些好用的 Dify DSL 工作流程，自用、学习两相宜。 Sharing some Dify workflows.

A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.

Python and OpenCV based object tracking software

A containerized bioinformatics pipeline for viral metagenomic data analysis

Nextflow pipeline to analyze PacBio HiFi full-length 16S data

📚 Novle setting | 小说书源及软件整理 爱阅书香 / 香色闺阁 / 阅读（含字体、净化规则、TTS配置）

customizable pipeline to identify viral sequences from (meta)genomic data

Companion scripts used for exploring the phageome

Perl script to download genomes within a clade from NCBI Refseq

Finds candidate kmers with high variability between an inclusion and an exclusion group to design qPCR assays.

Scripts to download genomes from the NCBI FTP servers

Pipleine code for "Sensitive identification of bacterial DNA in clinical specimens by broad range 16S rRNA enrichment"

一个支持windows/linux/mac的文本编辑器，目标是做中国人自己的编辑器，来自中国。

A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies

HPC based pipelines for variant calling using GATK

Variant Calling Pipeline Using GATK4 and Nextflow

Bpipe - a tool for running and managing bioinformatics pipelines

A cross-platform command-line tool for executing jobs in parallel

Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.

JavaScript library for all kinds of color manipulations