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3 stars written in Python
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scverse / scanpy

Single-cell analysis in Python. Scales to >100M cells.

Python 2,407 730 Updated Apr 9, 2026

Starlitnightly / omicverse

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

Python 941 115 Updated Apr 9, 2026

scverse / squidpy

Spatial Single Cell Analysis in Python

Python 560 110 Updated Apr 7, 2026