Pan-Cancer Single Cell Classifier

Stremio - Freedom to Stream

AnnData interoperability in R

Bioinformatics web-platform visualisation dashboard creation

Vitessce is a visual integration tool for exploration of spatial single-cell experiments.

Methods to discover gene programs on single-cell data

Unofficial Microsoft Teams for Linux client

Single cell trajectory detection

HTML output formats for RMarkdown documents

Interfaces for Multivariate Analysis in R

A toolkit for single-cell immune profiling

An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.

Functions for identifying and characterizing continuous developmental trajectories in single-cell data.

Tools for theming Shiny and R Markdown via Bootstrap 3, 4, or 5.

Call LLM APIs from R

An end-to-end Single-Cell Omics analysis Pipeline designed to facilitate comprehensive analysis and exploration of single-cell omics data.

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

Probabilistic cell segmentation for in situ spatial transcriptomics

Profile purification of single-cell spatial transcriptomics data

Spatial Single Cell Analysis in Python

From geospatial to spatial -omics

Spatial omics analysis toolbox

Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.

Spatial Transcriptomics Capture Location Deconvolution

Animated interactive grammar of graphics

R toolkit for the analysis of single-cell chromatin data

An implementation of the Grammar of Graphics in R