Tools (written in C using htslib) for manipulating next-generation sequencing data

Cloud-native genomic dataframes and batch computing

C library for high-throughput sequencing data formats

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtool…

A nicer `git pull`

A Variant Call Format reader for Python.

Distributed Graph Analytics (DGA) is a compendium of graph analytics written for Bulk-Synchronous-Parallel (BSP) processing frameworks such as Giraph and GraphX. The analytics included are High Bet…

RFMIX - Local Ancestry and Admixture Inference Version 2

Haplotype phasing software

Minimac3 is a low memory and computationally efficient implementation of the genotype imputation algorithms. Minimac3 is designed to handle very large reference panels in a more computationally eff…

SEQSpark documentation