GitHub - hiseric1/head_and_neck_data: head and neck data

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Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
citup2_final_without_1_out		citup2_final_without_1_out
output_p3_cp		output_p3_cp
all_mut_stats.py		all_mut_stats.py
all_mut_stats_mut.py		all_mut_stats_mut.py
alt. The dictionary value is a tuple: (ref_reads, alt_reads)		alt. The dictionary value is a tuple: (ref_reads, alt_reads)
census.tsv		census.tsv
citup_tree_plot_final2.py		citup_tree_plot_final2.py
convert_from_pclonevi_to_citup.py		convert_from_pclonevi_to_citup.py
crete_bar_chart_hatchet.py		crete_bar_chart_hatchet.py
extract_from_mutect.py		extract_from_mutect.py
extract_one_mut.py		extract_one_mut.py
filter_for_decifer_from_json.py		filter_for_decifer_from_json.py
filter_hatchet_head_and_neck.py		filter_hatchet_head_and_neck.py
filter_mutations.py		filter_mutations.py
filter_mutations_hatchet.py		filter_mutations_hatchet.py
filter_vaf.py		filter_vaf.py
frequencies_150_p3_cp.txt		frequencies_150_p3_cp.txt
frequencies_179_p3_cp.txt		frequencies_179_p3_cp.txt
frequencies_184_p3_cp.txt		frequencies_184_p3_cp.txt
frequencies_190_p3_cp.txt		frequencies_190_p3_cp.txt
frequencies_205_p3_cp.txt		frequencies_205_p3_cp.txt
generate_abs_diff_plots.py		generate_abs_diff_plots.py
json_to_tsv_for_pyclone.py		json_to_tsv_for_pyclone.py
num_mutations_stat.py		num_mutations_stat.py
output_p3_cp.treeScores.tsv		output_p3_cp.treeScores.tsv
output_p3_cp.tree_0.txt		output_p3_cp.tree_0.txt
output_p3_cp.tree_1.txt		output_p3_cp.tree_1.txt
outt.txt		outt.txt
plot_vaf.py		plot_vaf.py
plot_vaf_histogram.py		plot_vaf_histogram.py
plot_with_gene_names.py		plot_with_gene_names.py
prepare_citup_triplets.py		prepare_citup_triplets.py
prepare_for_citup.py		prepare_for_citup.py
prepare_for_citup_inputs_triplets.py		prepare_for_citup_inputs_triplets.py
process_patient_triplets.py		process_patient_triplets.py
process_pyclone_and_run_citup.py		process_pyclone_and_run_citup.py
pyclone_to_decifer_filtered.py		pyclone_to_decifer_filtered.py
read_vcf_hn.py		read_vcf_hn.py
submit_full_pipeline.sh		submit_full_pipeline.sh