Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.

A single-cell demultiplexing pipeline, the sharp (♯)

SCING: Single-Cell pIpeliNe Garden (pronounced as "sing" /siŋ/)

Conversion between scRNA-seq objects

VS Code in the browser

Genomics Workflows on AWS

Python datetimes made easy

A tool for enriching the output of nvidia-smi.

Subpopulation detection in high-dimensional single-cell data

DS4C: Data Science for COVID-19 in South Korea

📚 Parameterize, execute, and analyze notebooks

Building custom reference package for Cell Ranger ATAC and ARC

A Python library for dealing with dates

TreeCmp: comparison of trees in polynomial time

Packer templates for building minimal Vagrant baseboxes for multiple platforms

Create pre-defined window/pane layouts and run commands in iTerm

Shared Bats helper documentation

Common filesystem assertions for Bats

Common assertions for Bats

Supporting library for Bats test helpers

Bash Automated Testing System

cBioPortal for Cancer Genomics

Command-line JSON processor

Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.

Common Workflow Language reference implementation

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

Extend the power of multiple selections in Sublime Text. Modify selections, insert numeric sequences, incremental numbers, generate uuids, date ranges, insert continuously from a word list and more.

A lightweight library that provides tools for organizing asynchronous code