ML/DS projects with a blogpost 📝 ✒️ @ https://itsvenu.github.io/

AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project

Mutational Signatures extraction - Pediatric cancers

ML Roadmap 🛣️📌⏳

Specific analysis code bits for JE,VT 2020 (excluding custom pipelines)

R package to get tweets from ISMB/ECCB 2019 conference, Basel. Full doc: itsvenu.github.io/ismb2019/

OneLiners

inTAD-shiny development

k-mer based assembly of sequence by the help of deBruijn grpah

Script detects whether the variant called from NGS data is in Homopolymer site on reference genome(hg19).

Finding the most likely common ancestor / a consensus sequence of a group of sequences.

Various scripts for analysing the nucleotide sequences. Number of nucleotides, GC content of sequences etc.

Scripts useful analyzing genomic sequences in terms of k-mers

Evidence of protein CT folding from structure.

Compactness of a protein conformation through Radius of Gyration & Moment of Inertia

Amino acid composition of a protein sequence

Parse pdb file

Coordinates of center of mass and distance of each residue from COM.

Connects to online databases - PDB, PFAM, RFAM, EMBL, PROSITE, UNIPROT.

Neighboring residues of each residue within 8A distance.

Terminal hydrophobicity of a sequence - Important for determination of CT protein folding

Protein in vivo half life: N-end Rule

Protein Grand Average of Hydropathy.