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A single model for all your molecular design tasks

Python 174 19 Updated Sep 17, 2025

OpenADMET Competition

Python 8 2 Updated Mar 28, 2026

Python package to analyse binding kinetics data with simple models

Jupyter Notebook 3 Updated Mar 20, 2026

RGReco: A Unified Framework for Automated R-Group Recognition in Chemical Publications

Python 11 1 Updated Mar 2, 2026
Python 35 4 Updated Feb 20, 2026

A modern Python library for SLURM workload manager integration with workflow orchestration capabilities.

Python 11 Updated Apr 9, 2026

Code used to mine surfaces.

Python 29 11 Updated Feb 23, 2025

Chi is an open source Python package which is designed for PKPD modelling and model-informed precision dosing (MIPD).

Python 17 6 Updated Oct 24, 2025

AI-augmented R-group exploration in medicinal chemistry

Python 20 2 Updated Sep 25, 2024

Let LLM run your MDs.

Python 258 41 Updated Sep 18, 2025
C++ 11 3 Updated Apr 10, 2026
C++ 917 86 Updated Apr 10, 2026

A web-based novel drug design platform for up-to-date bioisosteric replacement

Python 26 1 Updated Nov 5, 2025

A Multi-Task Generative model for Structure-Based Drug Design

Jupyter Notebook 61 9 Updated Apr 10, 2026
Jupyter Notebook 13 4 Updated Nov 13, 2025

This repository provides the scripts to generate and analyze the LOBSTER dataset of small molecule superpositions. The dataset is available at https://doi.org/10.5281/zenodo.12658320.

Python 10 1 Updated Nov 18, 2024
Python 17 2 Updated Sep 30, 2025

書籍「現場で活用するための生成AIエージェント実践入門」(講談社サイエンティフィック社)で利用されるソースコード

Python 193 71 Updated Sep 9, 2025
Jupyter Notebook 10 1 Updated Oct 26, 2025

GPU-accelerated molecular docking software: Uni-Dock 2

C++ 50 18 Updated Apr 9, 2026

Generate Simple Pharmacophore Models with RDKit

Jupyter Notebook 43 6 Updated Mar 10, 2026
Python 96 13 Updated Apr 1, 2026

PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.

Python 239 32 Updated Nov 5, 2025
Jupyter Notebook 13 2 Updated Nov 11, 2024

BitBIRCH-Lean, a memory-efficient implementation of BitBIRCH designed for high-throughput clustering of huge molecular libraries

Python 115 13 Updated Apr 11, 2026

BindCraft modified to make PyRosetta use and installation optional: no license needed

Python 134 22 Updated Nov 30, 2025

A toolkit developed to predict and analyze PROTAC-mediated ternary complexes using AlphaFold3 and Boltz-1.

Python 41 6 Updated Jul 17, 2025

Official inference framework for 1-bit LLMs

Python 38,090 3,407 Updated Mar 10, 2026
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