Stars
A set of ready to use Agent Skills for research, science, engineering, analysis, finance and writing.
Collaborative cheatsheets for console commands 📚.
Conda recipes for the bioconda channel.
Official code repository for GATK versions 4 and up
Identify which human reference genome was used to align a BAM/SAM/CRAM file
Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
📦 Repomix is a powerful tool that packs your entire repository into a single, AI-friendly file. Perfect for when you need to feed your codebase to Large Language Models (LLMs) or other AI tools lik…
A library of free open source icons for science illustrations in biology and chemistry
CellRank: dynamics from multi-view single-cell data
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃♀️
🎄Visualization and annotation of phylogenetic trees
A topic-centric list of HQ open datasets.
High-velocity, monorepo-scale workflow for Git
Statistical Inference via Data Science: A ModernDive into R and the Tidyverse
A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
R package implementation of Milo for testing for differential abundance in KNN graphs
R package for the joint analysis of multiple single-cell RNA-seq datasets
Lorem-Ipsum-like Helpers for fast Shiny Prototyping
Convert Seurat objects to 10x Genomics Loupe files.
Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs
Analysis pipeline for cancer sequencing data
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
Scientific Inkscape: Inkscape extensions for figure resizing and editing
A lightweight version of R Markdown (without using Pandoc or knitr)