Conda recipes for the bioconda channel.

Multi-sample multi-group scRNA-seq analysis tools

🎄Visualization and annotation of phylogenetic trees

R package for semi-supervised single-cell data integration

A library of free open source icons for science illustrations in biology and chemistry

A lightweight version of R Markdown (without using Pandoc or knitr)

📚 Collaborative cheatsheets for console commands

Uniform Manifold Approximation and Projection

Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.

Single-cell Case Control Analysis

Official code repository for GATK versions 4 and up

R toolkit for single cell genomics

A small database of weird gene annotations

Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

Explore the cancer relevance of your gene list

Integrative Composable Visualization Framework for ggplot2

AnnData interoperability in R

Scientific Inkscape: Inkscape extensions for figure resizing and editing

A topic-centric list of HQ open datasets.

📦 Repomix is a powerful tool that packs your entire repository into a single, AI-friendly file. Perfect for when you need to feed your codebase to Large Language Models (LLMs) or other AI tools lik…

Your One-Stop Publication Workbench

A CLI tool to convert your codebase into a single LLM prompt with source tree, prompt templating, and token counting.

The R Installation Manager

LongcallR is a SNP caller for single molecule long-read RNA-seq data

Transcript quantification import with automatic metadata detection

🔠 ggplot2 geoms to fit text into boxes

C++ Library to parse Illumina InterOp files

Visualising data frames as funky heatmaps 📊

✂️ ⚡ Rapid haploid variant calling and core genome alignment

Per-base per-nucleotide depth analysis