Commits

Commits on Dec 9, 2015

In Aligned.toTranscriptome.out.bam (--quantMode TranscriptomeSAM), non-primary SAM flag is assigned to all but one randomly selected alignment.
alexdobin
committed
6dc1798
Fixed a bug that filtered out some chimeric junctions.
alexdobin
committed
470e9f4

Commits on Dec 3, 2015

Fixed a bug that prevented chimeric output for some of the circular configurations.
alexdobin
committed
7e15df9

Commits on Dec 1, 2015

Prohibit --outSAMtype SAM with othet options.
alexdobin
committed
aa06a08

Commits on Nov 30, 2015

Commits on Nov 20, 2015

Added counting of chimeric reads into Log.final.out .
alexdobin
committed
e0ca9bf

Commits on Nov 18, 2015

Compiled executables.
alexdobin
committed
f58b9c4
Fixed a bug in --outSAMfilter KeepOnlyAddedReferences.
alexdobin
committed
ce1ee43

Commits on Nov 17, 2015

Updated executables.
alexdobin
committed
454728d
Fixed a minor bug that caused rare seg-faults.
alexdobin
committed
7567018

Commits on Nov 13, 2015

Fixed a minor bug in STARlong extension at the ends of the read.
alexdobin
committed
fad55ce

Commits on Nov 11, 2015

Fixed a seg-fault that occurred when non-default value of --genomeChrBinNbits was used.
alexdobin
committed
ebd9473

Commits on Nov 10, 2015

Commits on Nov 7, 2015

STAR_2.5.0a
alexdobin
committed
4e1b232
Added STARlongForMacStatic compilation target to Makefile
alexdobin
committed
57c5ffc

Commits on Nov 6, 2015

Reformatted CHANGES.md
alexdobin
committed
7e9715a
Updated RELEASEnotes
alexdobin
committed
f07d43f
Updated CHANGES.
alexdobin
committed
60e242b
Implemented random multialignment output, see CHANGES for details.
alexdobin
committed
6189527

Commits on Nov 5, 2015

Commits on Nov 4, 2015

Implemented --outSAMfilter KeepOnlyAddedReferences option.
alexdobin
committed
f09d8a9
improve flag handling
wookietreiber
committed
bd54918
htslib allows user-defined CC, CFLAGS and CPPFLAGS
wookietreiber
committed
53dc661

Commits on Nov 3, 2015