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Script summarizes Mycobacterium tuberculosis genotypes & drug resistance profiles from result files. It detects Uganda-specific lineages and resistance-associated mutations across key anti-TB drugs.

This script performs bacterial genomic analysis - such as SNP calling & antibiotic resistance detection in Klebsiella pneumoniae (FastQC, Snippy, AMR gene screening)

This is a simple Bioinformatics App

This tool provides a modular WDL-Docker-Cromwell environment for rMAP, a bioinformatics pipeline for analyzing microbial genomic data, genome assembly & profiling of the resistome, mobilome & virul…

Low Level

1s and 0s

My Python, Our Python

This is tropical-temperate

Script to extract species abundance from Kraken2 report file

Comprehensive genomic workflow - reference data retrieval, variant calling, custom database setup, annotation, & missense variant filtering

This is a couch

A comprehensive pipeline for HIV drug resistance identification, variant evaluation, and surveillance.

My Personal Website: Publications, Repositories, Projects, Resources & Media

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Files for my blender donut

This is my website

Add biological annotations to variants in a given VCF file.

Bacterial analysis toolbox for full ESKAPEE pathogen characterisation and profiling the resistome, mobilome, virulome & phylogenomics using WGS