Make SVG figures out of the Burrows-Wheeler Matrix and various auxiliary text-space and BWT-space structures

Coalescent Odds

A long-context encoder-decoder Package for Pangenomes

Simple-to-use interactive comparison of two bacterial genomes

Wavefront alignment algorithm (WFA) in Golang

A Rust library providing fully dynamic sets of k-mers with high locality

Nail is an Alignment Inference tooL

Code used to analyze data and create plots for "Quantitative measurement of antibiotic resistance in Mycobacterium tuberculosis reveals genetic determinants of resistance and susceptibility in a ta…

Constructing a pangenome gene graph

Simple instructions for long read Oxford Nanopore assembly with some extras

Teaching modules for Human Genome Variation Lab.

Coloured de Bruijn Graph Builder

Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)

Wrapper for minimap2 for alignment of viral sequences to reference

Benchmarking pairwise aligners

motus - a tool for marker gene-based OTU (mOTU) profiling

Calculate distances between phylogenetic trees in R

Recombination-free trees

Align proteins to genomes with splicing and frameshift

Create beautiful Gantt charts with ggplot2

Common Lisp Koans is a language learning exercise in the same vein as the ruby koans, python koans and others. It is a port of the prior koans with some modifications to highlight lisp-specific fea…

A small database of weird gene annotations

Pod5: a high performance file format for nanopore reads.

Deep networks for protein functional inference

🗜 💻 A crash course on Data Compression.

Read contamination removal

Examples of how to create colorful, annotated equations in Latex using Tikz.

Tesserae2: Fast recombination-aware global and local alignment.