The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.

21 Lessons, Get Started Building with Generative AI

Semantic Versioning Specification

A system-level, binary package and environment manager running on all major operating systems and platforms.

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Successful Job Applications and Grants

Automatically exported from code.google.com/p/cdhit

Exitwp is tool primarily aimed for making migration from one or more wordpress blogs to the jekyll blog engine as easy as possible.

A quality control analysis tool for high throughput sequencing data

A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.

Shell scripting utility functions and a bash script boilerplate template

Automatically exported from code.google.com/p/figtree

Accurate Species TRee ALgorithm

Bayesian Evolutionary Analysis by Sampling Trees

Minimal tutorial on making a simple website with GitHub Pages

Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style SFS for demographic analysis

Recovering genes from targeted sequence capture data

A statistical framework for ploidy estimation using NGS short-read data

Sequence simulator

a bash pipeline for RAD sequencing

G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual genome sequences.

Should you cite this software?

Automatically exported from code.google.com/p/densitree

Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics

Scripts for file processing and analysis in phylogenetics and phylogeography

Testing hybridization using species trees

Utilities for automating bgc (Bayesian genomic cline) file prep, analysis, and results plotting

Models for dealing with morphological data

Analyses done on sequence capture data from a Illumina HiSeq3000 and NextSeq, PE100 and PE150 respectively. The data were analyzed using the HybPiper pipeline

Results from our project "Using ecological niche modeling to predict the response of Hydrocotyle bonariensis to global climate change"