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21 Lessons, Get Started Building with Generative AI
A quality control analysis tool for high throughput sequencing data
Scripts for file processing and analysis in phylogenetics and phylogeography
Results from our project "Using ecological niche modeling to predict the response of Hydrocotyle bonariensis to global climate change"
1
Updated Feb 14, 2022
Results from our project "Predicting the responses of Northern Gulf of Mexico coastal dune plant communities to climate change using ecological niche modeling"
1
Updated Feb 27, 2022
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
Automatically exported from code.google.com/p/cdhit
G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual genome sequences.
Automatically exported from code.google.com/p/figtree
Shell scripting utility functions and a bash script boilerplate template
Utilities for automating bgc (Bayesian genomic cline) file prep, analysis, and results plotting
A system-level, binary package and environment manager running on all major operating systems and platforms.
Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Recovering genes from targeted sequence capture data
Analyses done on sequence capture data from a Illumina HiSeq3000 and NextSeq, PE100 and PE150 respectively. The data were analyzed using the HybPiper pipeline
2
Updated Apr 4, 2018
A statistical framework for ploidy estimation using NGS short-read data
The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.
Minimal tutorial on making a simple website with GitHub Pages
Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style SFS for demographic analysis
Automatically exported from code.google.com/p/densitree