Rust implementation of the Synthetic Biology Open Language (SBOL 3.1.0)

A vector index built on TurboQuant, written in Rust with Python bindings

Graph database optimized for fast analysis and real-time data processing. It is provided as an extension to PostgreSQL.

A lightweight ontology for consistent identification and description of human cohorts. It defines a unique cohort identifier with minimal metadata, enabling linkage, discovery, and integration of c…

Definition and DDLs for the OMOP Common Data Model (CDM)

Disease Mechanisms KB

The EMBL-EBI Ontology Lookup Service (OLS)

Jenkins-based automation of phenotype semantic similarity on PHENIO with Semsimian.

👻 Ghostty is a fast, feature-rich, and cross-platform terminal emulator that uses platform-native UI and GPU acceleration.

ACL 2022, SimKGC: Simple Contrastive Knowledge Graph Completion with Pre-trained Language Models

ICTV taxonomy database - data export, schema and maintenance scripts

🤖 A Python library for learning and evaluating knowledge graph embeddings

🎡 Unified access to OLS instances like from the EBI and TIB

An MCP for retrieving information from the Ontology Lookup Service

VS Code Extension to explore Parquet and CSV files with DuckDB SQL

Explore Parquet files with SQL

A model context protocol (MCP) server for the EBI Ontology Lookup Service (OLS)

SteamOS session compositing window manager

Vim mode for VSCode, powered by Neovim

Linux kernel driver for Xbox One and Xbox Series X|S accessories

Simple rust implementation of semantic similarity

A set of tools that annotate free text to ontologies using LLMs.

Monarch agent tutorial

KGX is a Python library for exchanging Knowledge Graphs

Files for the Bioschemas website.

[WIP] ontology mapping using LLMs and RAG

Ingest for Micronutrient Information Center using OntoGPT

Precision Medicine Knowledge Graph (PrimeKG)