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jamesmbaazam/README.md

Hi there, I am a Research Fellow at the London School of Hygiene and Tropical Medicine, based at the Centre for Mathematical Modelling of Infectious Diseases (CMMID), where I work with Dr. Kathleen O'Reilly on:

  • Analyzing the utility of wastewater surveillance for routine monitoring of infectious diseases in South Africa

  • Developing mathematical and statistical models to predict the risk of polio outbreaks in Africa

Previously, I was a Research Software Engineer with the Epiverse-TRACE Initiative, developing and maintaining R packages for reproducible analytics during epidemics.

See my personal website for more details.

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  1. epiverse-trace/epichains epiverse-trace/epichains Public

    Methods for simulating and analysing the sizes and lengths of infectious disease transmission chains from branching process models

    R 8 3

  2. epiforecasts/EpiNow2 epiforecasts/EpiNow2 Public

    Estimate Realtime Case Counts and Time-varying Epidemiological Parameters

    R 132 38

  3. resources resources Public

  4. intro-to-idd-modelling intro-to-idd-modelling Public

    Introduction to Infectious Disease Modelling

    JavaScript 1 2

  5. mppr mppr Public

    Materials for the in-person "Modelling for Pandemic Preparedness and Response" Modular Shortcourse

    1 8

  6. mppr_intro_to_model_fitting mppr_intro_to_model_fitting Public

    Introduction to model fitting concepts

    JavaScript 1