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PlantsSM Public
A package to expose Secondary Metabolism of plants with Machine Learning and Systems Biology
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polaris-method-comparison Public
Forked from polaris-hub/polaris-method-comparisonExperiments for the method comparison paper.
Jupyter Notebook MIT License UpdatedSep 30, 2025 -
np_fingerprint_benchmark Public
Benchmark of molecular fingerprints for natural product discovery using DeepMol
Jupyter Notebook MIT License UpdatedSep 30, 2025 -
MetabolicPathwayPrediction Public
Forked from baranwa2/MetabolicPathwayPredictionJupyter Notebook Apache License 2.0 UpdatedSep 26, 2025 -
ginestra25 Public
Forked from bcorrad/ginestra25This repository contains the official PyTorch implementation for the research project GINESTRA: Graph-based embeddINgs for Exploring Secondary-metabolite Taxonomy, Recognition, and Annotation. The …
Python Other UpdatedSep 26, 2025 -
ec_numbers_prediction Public
Protein LLMs and BLAST to predict EC numbers
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Retroformer Public
Forked from LucianaMartins26/Retroformer_ThesisJupyter Notebook MIT License UpdatedSep 4, 2025 -
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SMPrecursorPredictor Public
A ML pipeline for the prediction of specialised metabolites precursors.
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A jupyter hub docker app for metabolic modelling using mewpy, troppo, cobra, etfl and cplex.
Shell MIT License UpdatedOct 12, 2024 -
plant_bgc_predictor Public
Self-supervised and transfer learning to predict plant BGCs
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mgcnn_alkaloid Public
Forked from naono-git/mgcnn_alkaloidMolecular Graph Convolutional Neural Networks
Python Other UpdatedMar 27, 2024 -
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rstudio_server Public
A podman application to create an Rstudio server
Shell MIT License UpdatedApr 12, 2023 -
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version-control-tutorial Public
Forked from nebi-um/version-control-tutorialWorkshop Version Control
Python MIT License UpdatedFeb 23, 2022 -
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bittersweet Public
Forked from cosylabiiit/bittersweetPython GNU Affero General Public License v3.0 UpdatedMar 4, 2019
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