Lists (1)
Stars
A comprehensive cancer DNA/RNA analysis and reporting pipeline
Repository for development of the genomic module of the CDM.
Code for processing data collected by the International Tamoxifen Pharmacogenomics Consortium
A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.
Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs
Detecting methylation using signal-level features from Nanopore sequencing reads
Open workflow definitions for genomic analysis from MGI at WUSM.
A versatile pairwise aligner for genomic and spliced nucleotide sequences
A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
Harmonization of AMR predictor tool outputs
Tool to upload SARS-CoV-2 sequences to BH20 Arvados instance and orchestrate analysis
This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
1 minute, random topic, random slides --- GO!
An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company Zetta Genomics. Found a bug or have an idea for a new featur…
Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.
Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.
SquiggleKit: A toolkit for manipulating nanopore signal data
CWL for GDC DNASeq workflows
Annotate models of genetic inheritance patterns in variant files (vcf files)