Creating alignment plots from bam files

Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data

Alignment-based filtering CLI tool

Paper Debugger is the best overleaf companion

Identifies duplicate reads. This tool locates and tags duplicate reads in a coordinate ordered SAM or BAM file.

🦀︱High-performance learned index structures

The strongly-typed, compiled embedded scripting language for Rust, used by Rotonda.

Lint Nextflow pipelines in Python.

expressions on VCFs

VCF Zarr Specification

Sandbox for securely executing untrusted programs

Example genomics data for tool developers

A grep-like tool which understands source code syntax and allows for manipulation in addition to search

Genotype likelihood simulator for VCF/BCF files

Work with bioinformatic files using Arrow, Polars, and/or DuckDB

Kani Rust Verifier

Making parsing a breeze

Rust async runtime based on io-uring.

a Hassle-Free Python Experience

Python compiler

Gzip Decompression and Random Access for Modern Multi-Core Machines

Command-line sampling profiler for macOS, Linux, and Windows

Cleanlab's open-source library is the standard data-centric AI package for data quality and machine learning with messy, real-world data and labels.

A Rust implementation of Glidesort, my stable adaptive quicksort/mergesort hybrid sorting algorithm.

an API for intersections of genomic data

Oxbow makes genomic data ready for high-performance analytics.

The Modular Platform (includes MAX & Mojo)

Singular Genomics Demultiplexing Tool

Genomic coordinates of problematic genomic regions as GRanges