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written in OCaml
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Tool suite for kappa models. Documentation and binaries can be found in the release section. Try it online at
A meta-language for Kappa generation that allows the creation of protein hierarchies and the concise representation of protein-interaction rules. These structures can then be expanded into Kappa.
A simple tool that takes a Kappa trace and a rule name, and lists values (and corresponding frequencies) taken by each logical site of each agent on which the rule has been applied.