Open Vehicle Monitoring System - Version 3

Download and import HGNC gene data into R

Structural Variant Prediction Viewer

Nextflow training material

Virtual Desktop Tools for Windows 11 and 10.

Structural variant detection and association testing

User-friendly Scheduler for sub-node tasks for HPC systems

Local filesystem registry for containers (intended for HPC) using Lmod or Environment Modules. Works for users and admins.

hail-based pipelines for annotating variant callsets and exporting them to elasticsearch

Plot structural variant signals from many BAMs and CRAMs

Structural Variant Index

Primary Block Lists

Custom Zigbee Light Link Lights

RAxML Next Generation: faster, easier-to-use and more flexible

Functional highly reproducible bioinformatics pipelines

Tools (written in C using htslib) for manipulating next-generation sequencing data

A versatile pairwise aligner for genomic and spliced nucleotide sequences

A DSL for data-driven computational pipelines

Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).

ONT assembly and Illumina polishing pipeline

A modern re-imagining of the data frame

Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumptions about the data generation process: quantile normalization …

Accurate and robust imputation of scRNA-seq data