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Self-verification for LLMs.

Jupyter Notebook 66 10 Updated Jul 22, 2023

Almanac: Retrieval-Augmented Language Models for Clinical Medicine

Python 36 7 Updated Mar 5, 2024

Software to implement GoT with a weviate vectorized database

Python 678 46 Updated Mar 25, 2025

This is the official code for paper: [PiVe: Prompting with Iterative Verification Improving Graph-based Generative Capability of LLMs]

Python 35 1 Updated Aug 31, 2024

Exploring the potential of fine-tuning Large Language Models (LLMs) like Llama2 and StableLM for medical entity extraction. This project focuses on adapting these models using PEFT, Adapter V2, and…

Python 87 13 Updated Dec 13, 2023
Python 1,365 465 Updated Nov 3, 2023

Precision Medicine Knowledge Graph (PrimeKG)

Jupyter Notebook 648 130 Updated May 27, 2024

A curated list of awesome healthcare taxonomies and knowledge graphs.

74 5 Updated Mar 24, 2024

scalable knowledge graph construction from unstructured text

Scala 95 21 Updated Mar 4, 2020

MedDistant19: Towards an Accurate Benchmark for Broad-Coverage Biomedical Relation Extraction (COLING 2022)

Python 18 2 Updated Oct 13, 2022

PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models

Python 195 33 Updated May 3, 2024

[JMIR Medical Informatics] Automatic Rare Disease Knowledge Graph Construction

Python 14 2 Updated Dec 1, 2023

MedType: Improving Medical Entity Linking with Semantic Type Prediction

Python 116 11 Updated Feb 10, 2023

Repository for student projects within biomedical text mining from Lund University

Jupyter Notebook 56 13 Updated May 26, 2023

A corpus of Biomedical papers annotated with mentions of UMLS entities.

339 35 Updated Nov 9, 2021

[EMNLP 2022] An Open Toolkit for Knowledge Graph Extraction and Construction

Python 4,180 730 Updated Jul 19, 2025

The Enterprise-Grade Production-Ready Multi-Agent Orchestration Framework. Website: https://swarms.ai

Python 5,374 672 Updated Nov 5, 2025

The official codes for "PMC-LLaMA: Towards Building Open-source Language Models for Medicine"

Python 669 61 Updated Jul 8, 2024

Awesome papers about unifying LLMs and KGs

2,502 172 Updated May 2, 2025

NLP-powered tool designed to extract data from PDF documents. Using Optical Character Recognition (OCR) technology and GPT language model, this tool offers the capability to read, interpret, and co…

Python 10 1 Updated Oct 4, 2023

Easy-to-use LLM fine-tuning framework (LLaMA, BLOOM, Mistral, Baichuan, Qwen, ChatGLM)

Python 1 1 Updated Oct 29, 2025

Chinese medical dialogue data 中文医疗对话数据集

Python 1,597 277 Updated Aug 18, 2023

YuLan: An Open-Source Large Language Model

Python 633 58 Updated Jan 10, 2025

The official GitHub page for the survey paper "A Survey of Large Language Models".

Python 11,947 932 Updated Mar 11, 2025

[ICLR'24] Enhancing Healthcare Predictions with Personalized Knowledge Graphs

Python 184 38 Updated Feb 18, 2025
Jupyter Notebook 6 1 Updated Sep 10, 2022

A customizable pipeline for data extraction from MIMIC-IV; now multimodal!

Jupyter Notebook 274 96 Updated Oct 28, 2025

Python suite to construct benchmark machine learning datasets from the MIMIC-III 💊 clinical database.

Python 859 345 Updated Apr 16, 2023

Code for "Heterogeneous Graph Transformer" (WWW'20), which is based on pytorch_geometric

Python 876 171 Updated Dec 20, 2023
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