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The repo is finally unlocked. enjoy the party! The fastest repo in history to surpass 100K stars ⭐. Join Discord: https://discord.gg/5TUQKqFWd Built in Rust using oh-my-codex.
A set of ready to use Agent Skills for research, science, engineering, analysis, finance and writing.
Monoclonal Antibody GEnerator (MAGE) - a fine-tuned LLM for generating paired heavy-light antibody variable sequences with predicted binding specificity to an input antigen prompt sequence
Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
An atlas of CRISPR-Cas systems from systematic genome mining
Get up and running with Kimi-K2.5, GLM-5, MiniMax, DeepSeek, gpt-oss, Qwen, Gemma and other models.
Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms
Joint sequence and structure generation with RoseTTAFold sequence space diffusion
🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)
This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-shot active learning.
EvolveX, a de novo antibody computational design pipeline.
Genome modeling and design across all domains of life
Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
An efficient CLI to extract sequences from the SRA
Chai-1, SOTA model for biomolecular structure prediction
KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods