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Starred repositories

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Short-read and long-read sequencing tools for diagnostics

C++ 168 33 Updated Nov 6, 2025

Generation of diagrams like flowcharts or sequence diagrams from text in a similar manner as markdown

TypeScript 83,929 8,243 Updated Nov 6, 2025

High performance self-hosted photo and video management solution.

TypeScript 83,564 4,382 Updated Nov 6, 2025

scikit-learn: machine learning in Python

Python 63,931 26,405 Updated Nov 6, 2025

Accelerated BLAST compatible local sequence aligner.

C++ 1,196 184 Updated Nov 6, 2025

A collection of Galaxy-related training material

HTML 344 1,013 Updated Nov 6, 2025

Fast and Accurate ML in 3 Lines of Code

Python 9,556 1,077 Updated Nov 6, 2025

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Nim 788 101 Updated Nov 6, 2025

Depth-weighted De-Mixing

HTML 125 38 Updated Nov 6, 2025

Universal markup converter

Haskell 40,061 3,676 Updated Nov 5, 2025

File and Archive Manager

C++ 2,008 227 Updated Nov 5, 2025

Etherpad: A modern really-real-time collaborative document editor.

TypeScript 17,867 2,978 Updated Nov 5, 2025

A private messenger for Android.

Kotlin 27,862 6,572 Updated Nov 5, 2025

Official code repository for GATK versions 4 and up

Java 1,865 619 Updated Nov 5, 2025

Nextstrain build for mpox virus

Python 50 23 Updated Nov 5, 2025

uBlock Origin - An efficient blocker for Chromium and Firefox. Fast and lean.

JavaScript 59,591 3,799 Updated Nov 5, 2025

Official home of genome aligner based upon notion of Cactus graphs

C 619 123 Updated Nov 5, 2025

scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

Python 990 286 Updated Nov 5, 2025

real time face swap and one-click video deepfake with only a single image

Python 75,332 10,962 Updated Nov 5, 2025

📓 eLabFTW is the most popular open source electronic lab notebook for research labs.

PHP 1,191 259 Updated Nov 5, 2025

Dotplot large Genomes in an Interactive, Efficient and Simple way

JavaScript 108 13 Updated Nov 5, 2025

☁️ The Most Secure and Easy Selfhosted Home Server. Take control of your data and privacy without sacrificing security and stability (Authentication, anti-DDOS, anti-bot)

JavaScript 5,225 184 Updated Nov 5, 2025

Customizable workflows based on snakemake and python for the analysis of NGS data

Python 397 89 Updated Nov 5, 2025

A list of Free Software network services and web applications which can be hosted on your own servers

256,637 11,848 Updated Nov 5, 2025

A library of free open source icons for science illustrations in biology and chemistry

Vue 1,554 91 Updated Nov 5, 2025

Presentation Slides for Developers

TypeScript 41,367 1,751 Updated Nov 5, 2025

Repository for suggesting new lineages that should be added to the current scheme

Jupyter Notebook 1,067 104 Updated Nov 4, 2025

Models and examples built with TensorFlow

Python 77,667 45,426 Updated Nov 4, 2025

Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

C++ 189 22 Updated Nov 4, 2025

A flexible pipeline for complete analysis of bacterial genomes

Nextflow 480 77 Updated Nov 4, 2025
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