Goslin is the Grammar on succinct lipid nomenclature.

Chemical Similarity Enrichment analysis of metabolomics datasets

⚛️ RDKit Python Wheels on PyPI. 💻 pip install rdkit

A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.

Scoring algorithm for Seqtometry

General R functions and scripts for publications

rMSI processing methods using C++

Access to Biological Web Services from Python.

IsoScope is an open-source, user-friendly software package to visualize and perform data analysis of mass spectrometry imaging (msi) data, with a focus on isotope labeling.

Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.

Cloud engine and platform for metabolite annotation for imaging mass spectrometry

tools and notes for spatial omics

IsoCor: Isotope Correction for mass spectrometry labeling experiments

Python Isotope Correction Package

Deep Learning network to segment lungs and metastases in mouse MRI images.

Mass spectrometry imaging toolbox

tools for manipulating imaging mass spectrometry data in python

Library of Integrated Cellular Signatures L1000

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

Examples of single-cell genomic analysis accelerated with RAPIDS

A Docker-based Data Science cookiecutter (for myself)

Simple search box for GitHub wikis.

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

Mass spectrometry imaging molecular spatial probability maps.

Tool for mass spectra metadata annotation.

An R package for handling and analysing imaging mass cytometry data

A pixel classification based multiplexed image segmentation pipeline