This repository explain that how you can easily SSH remote host automatically.

Format and normalise tracer metabolomics given file(s), to produce the .csv files which are ready for DIMet analysis.

Gradient Descent Optimization for Linear Regression

Goslin is the Grammar on succinct lipid nomenclature.

rMSI processing methods using C++

Chemical Similarity Enrichment analysis of metabolomics datasets

⚛️ RDKit Python Wheels on PyPI. 💻 pip install rdkit

A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.

General R functions and scripts for publications

Access to Biological Web Services from Python.

Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.

Cloud engine and platform for metabolite annotation for imaging mass spectrometry

tools and notes for spatial omics

Deep Learning network to segment lungs and metastases in mouse MRI images.

Mass spectrometry imaging toolbox

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

Examples of single-cell genomic analysis accelerated with RAPIDS

A Docker-based Data Science cookiecutter (for myself)

Simple search box for GitHub wikis.

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

Mass spectrometry imaging molecular spatial probability maps.

Tool for mass spectra metadata annotation.

Analysis Old vs Young of RNAseq bulk on 6 type cell (sort by FACs) and 4 time point (muscle regeneration) Reports

Galaxy tools for metabolomics maintained by Workflow4Metabolomics

Open source genome-scale metabolic models of human and model animals

Single sample pathway analysis tools for omics data