An Open Nextflow pipeline for analyzing DIA-MS (Data-Independent Acquisition Mass Spectrometry) data.

Democratizing ML in proteomics

Facilitating the use of Deep Visual Proteomics

Deepnote is a drop-in replacement for Jupyter with an AI-first design, sleek UI, new blocks, and native data integrations. Use Python, R, and SQL locally in your favorite IDE, then scale to Deepnot…

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

Metagraph Open Data and Query on AWS

A Photoshop AI plugin

Early developer preview of PROTOplast targets acceleration of ML model training workflows

Memray is a memory profiler for Python

Next Generation Agentic Proxy for AI Agents and MCP servers

R package for "sum of single effects" regression, version 2.0

Gzip Decompression and Random Access for Modern Multi-Core Machines

A data framework for biology. Makes your data queryable, traceable, reproducible, and FAIR. One API: lakehouse, lineage, feature store, ontologies, LIMS, ELN.

Interchangeable AoS and SoA containers

a high-performance, POSIX-ish Amazon S3 file system written in Go

MCP Toolbox for Databases is an open source MCP server for databases.

Developer-friendly OSS embedded retrieval library for multimodal AI. Search More; Manage Less.

Fast parquet command line tool with many functions, nailed it!

Accelerated genomics workflows in NextFlow

Multi-Omics Peptide Generator

Match FG phenotypes to other phenotypes

Github repo for the Experimental Factor Ontology (EFO)

Teaching tool and debugging aid in context of references, mutable data types, and shallow and deep copy.

Utilities to execute code blocks in Markdown files.

Automatically execute code blocks within a Markdown file and update the output in-place