The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

Fork of MITgcm with Darwin ecosystem model added

This package simulates the behaviors of an ensemble of phytoplankton individuals.

Toolbox for including enzyme constraints on a genome-scale model.

The ECOSYS model for terrestrial ecosystem biogeochemistry

🥧 HTTPie CLI — modern, user-friendly command-line HTTP client for the API era. JSON support, colors, sessions, downloads, plugins & more.

💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction

Materials for Dynamic allocation of carbon storage and nutrient-dependent exudation in a revised genome-scale model of Prochlorococcus paper

Visualization toolbox

A Bayesian approach to size-structured matrix population model to estimate daily rates of phytoplankton cell division, growth and respiration

CBIOMES seeks to develop and apply quantitative models of the structure and function of marine microbial communities at seasonal and basin scales.

A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima

notebooks and files for the Bayesian CBIOMES workshop

📚 List of awesome university courses for learning Computer Science!