R toolkit for single cell genomics

On top of spaghetti, all covered in cheese....

A RStudio addin for ggplot2 theme tweaking

R toolkit for the analysis of single-cell chromatin data

R package for geographical faceting with ggplot2

Shiny Interactive Web Apps for Single-Cell Data

Safely access RStudio's API (when available)

R functions for reading and writing from the system clipboard

BANKSY: spatial clustering

Annotate Package Load Calls

Coarse-graining of large single-cell RNA-seq data into metacells

A tool for removing doublets from single-cell RNA-seq data

R package for robust clustering of single cell RNA sequencing data

DUBStepR (Determining the Underlying Basis using Step-wise Regression) is a feature selection algorithm for cell type identification in single-cell RNA-sequencing data. This repository is no longer…

Code for reproducing analysis in MAM manuscript