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11 stars written in R
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R toolkit for single cell genomics

R 2,717 984 Updated Apr 22, 2026

Make Complex Heatmaps

R 1,490 245 Updated Apr 2, 2026

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

R 779 169 Updated Jan 6, 2024

A package to help convert different single-cell data formats to each other

R 465 67 Updated Feb 20, 2026

A visual exploratory tool on correlation matrix

R 344 90 Updated Oct 14, 2024

Color blindness friendly visualization of single-cell and bulk RNA-sequencing data

R 215 18 Updated Dec 10, 2025

Clone of the Bioconductor repository for the SingleR package.

R 202 20 Updated Apr 8, 2026

RNA velocity estimation in R

R 197 244 Updated Sep 14, 2023

Assessing the purity of single cell population

R 146 21 Updated Jun 3, 2022

Single Cell Cluster Evaluation

R 101 15 Updated Jul 28, 2021

Differential expression analysis for a study investigating the modulation of inflammation in keratinocytes

R 2 Updated Dec 5, 2018