-
Notifications
You must be signed in to change notification settings - Fork 183
Expand file tree
/
Copy pathDESCRIPTION
More file actions
171 lines (171 loc) · 4.38 KB
/
Copy pathDESCRIPTION
File metadata and controls
171 lines (171 loc) · 4.38 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
Package: ggpubr
Type: Package
Title: 'ggplot2' Based Publication Ready Plots
Version: 1.1.0
Date: 2026-07-30
Authors@R: c(
person("Alboukadel", "Kassambara", role = c("aut", "cre"), email = "alboukadel.kassambara@gmail.com"),
person("Laszlo", "Erdey", role = "ctb", email = "erdey.laszlo@econ.unideb.hu",
comment = "Faculty of Economics and Business, University of Debrecen, Hungary"))
Author: Alboukadel Kassambara [aut, cre], Laszlo Erdey [ctb] (Faculty of Economics and Business, University of Debrecen, Hungary)
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>
Description: The 'ggplot2' package is excellent and flexible for elegant data
visualization in R. However the default generated plots require some formatting
before we can send them for publication. Furthermore, to customize a 'ggplot',
the syntax is opaque and this raises the level of difficulty for researchers
with no advanced R programming skills. 'ggpubr' provides some easy-to-use
functions for creating and customizing 'ggplot2'-based publication ready plots.
This version adds publication-ready figures for common analysis workflows:
ROC curves with the area under the curve and its confidence interval
('ggrocplot()'), one- and two-way group comparison figures with brackets and
an omnibus label ('ggcompare()'), volcano plots ('ggvolcano()'), forest and
estimation plots ('ggestimates()'), raincloud plots ('ggraincloud()'),
compact letter displays ('stat_cld()') and test labels ('add_test_label()'),
together with automatic bracket packing for pairwise comparisons
('geom_pwc()').
License: GPL (>= 2)
LazyData: TRUE
Encoding: UTF-8
Language: en-US
Depends:
R (>= 4.1.0),
ggplot2 (>= 3.5.2)
Imports:
ggrepel (>= 0.9.2),
grid,
ggsci,
stats,
utils,
tidyr (>= 1.3.2),
purrr,
dplyr (>= 1.2.0),
cowplot (>= 1.2.0),
ggsignif,
scales,
gridExtra,
glue,
polynom,
rlang (>= 1.1.7),
rstatix (>= 1.1.0),
tibble,
magrittr
Suggests:
grDevices,
knitr,
rmarkdown,
RColorBrewer,
gtable,
testthat,
spelling,
datarium,
emmeans,
pROC,
patchwork,
ggcorrplot
VignetteBuilder: knitr
URL: https://rpkgs.datanovia.com/ggpubr/,
https://github.com/kassambara/ggpubr
BugReports: https://github.com/kassambara/ggpubr/issues
Collate:
'utilities_color.R'
'utilities_base.R'
'desc_statby.R'
'utilities.R'
'add_summary.R'
'add_test_label.R'
'annotate_figure.R'
'as_ggplot.R'
'as_npc.R'
'axis_scale.R'
'background_image.R'
'bgcolor.R'
'border.R'
'p_format_utils.R'
'compare_means.R'
'create_aes.R'
'diff_express.R'
'facet.R'
'font.R'
'gene_citation.R'
'gene_expression.R'
'geom_bracket.R'
'geom_exec.R'
'utils-aes.R'
'utils_stat_test_label.R'
'geom_pwc.R'
'geom_violin_half.R'
'get_breaks.R'
'get_coord.R'
'get_legend.R'
'get_palette.R'
'ggadd.R'
'ggadjust_pvalue.R'
'ggarrange.R'
'ggballoonplot.R'
'ggpar.R'
'ggbarplot.R'
'ggboxplot.R'
'ggcompare.R'
'ggdensity.R'
'ggpie.R'
'ggdonutchart.R'
'stat_conf_ellipse.R'
'stat_chull.R'
'ggdotchart.R'
'ggdotplot.R'
'ggecdf.R'
'ggerrorplot.R'
'ggestimates.R'
'ggexport.R'
'gghistogram.R'
'ggline.R'
'ggmaplot.R'
'ggpaired.R'
'ggparagraph.R'
'ggpubr-package.R'
'ggpubr_args.R'
'ggpubr_options.R'
'ggqqplot.R'
'ggraincloud.R'
'ggrocplot.R'
'utilities_label.R'
'stat_cor.R'
'stat_stars.R'
'ggscatter.R'
'ggscatterhist.R'
'ggstripchart.R'
'ggsummarystats.R'
'ggtext.R'
'ggtexttable.R'
'ggviolin.R'
'ggvolcano.R'
'gradient_color.R'
'grids.R'
'npc_to_data_coord.R'
'reexports.R'
'rotate.R'
'rotate_axis_text.R'
'rremove.R'
'set_palette.R'
'shared_docs.R'
'show_line_types.R'
'show_point_shapes.R'
'stat_anova_test.R'
'stat_central_tendency.R'
'stat_cld.R'
'stat_compare_means.R'
'stat_friedman_test.R'
'stat_kruskal_test.R'
'stat_mean.R'
'stat_overlay_normal_density.R'
'stat_pvalue_manual.R'
'stat_regline_equation.R'
'stat_welch_anova_test.R'
'text_grob.R'
'theme_pubr.R'
'theme_transparent.R'
'utils-geom-signif.R'
'utils-pipe.R'
'utils-tidyr.R'
'zzz.R'
RoxygenNote: 7.3.3