Homologizer: phasing gene copies into polyploid subgenomes

Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language

💫 Toolkit to help you get started with Spec-Driven Development

PERF is an Exhaustive Repeat Finder

A tool for evaluating long-read de novo assembly results

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

An accurate GFF3/GTF lift over pipeline

PASA software

Fast and accurate de novo assembler for long reads

Tools for working with agp files

Python library to identify Identical By State regions

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

the pangenome graph builder

Identification of transposable element families from pangenome polymorphisms

HELIANO is a software for detection and classification of Helitron-like elements.

TEtrimmer: a novel tool to automate manual curation of transposable elements

Example configuration to integrate Copilot into Emacs

Plattform for building a RDF Knowledge Graph from text Sources

MCHelper: An automatic tool to curate transposable element libraries

TensorFlow Tutorial and Examples for Beginners (support TF v1 & v2)

All course materials for the Zero to Mastery Deep Learning with TensorFlow course.

Linux multi-touch gesture recognizer

Generate an interactive dot plot from mummer or minimap alignments

Long-reads Gap-free Chromosome-scale Assembler

Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.

Parsing and analysis of ace files in python