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Offline till March 2025; Remind me if I don't respond
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Offline till March 2025; Remind me if I don't respond

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@borevitzlab @biocore @BioJulia @biospectrabysequencing @COMBINE-Canberra @bioconda @IWYP60 @plantimmunity

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40 stars written in Jupyter Notebook
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A latent text-to-image diffusion model

Jupyter Notebook 72,047 10,553 Updated Jun 18, 2024

The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

Jupyter Notebook 52,979 6,182 Updated Sep 18, 2024

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

Jupyter Notebook 28,360 7,957 Updated Jun 25, 2024

The fastai deep learning library

Jupyter Notebook 27,736 7,678 Updated Dec 15, 2025

Kalman Filter book using Jupyter Notebook. Focuses on building intuition and experience, not formal proofs. Includes Kalman filters,extended Kalman filters, unscented Kalman filters, particle filte…

Jupyter Notebook 18,537 4,434 Updated Aug 7, 2024

Free online textbook of Jupyter notebooks for fast.ai Computational Linear Algebra course

Jupyter Notebook 10,673 2,670 Updated Apr 16, 2024

From the basics to slightly more interesting applications of Tensorflow

Jupyter Notebook 5,668 1,167 Updated Dec 11, 2021

Beaker Extensions for Jupyter Notebook

Jupyter Notebook 2,835 381 Updated Dec 4, 2023

IPython Parallel: Interactive Parallel Computing in Python

Jupyter Notebook 2,635 1,011 Updated Dec 2, 2025

Examples of matplotlib codes and plots

Jupyter Notebook 1,205 297 Updated Oct 1, 2020

Principal Component Analysis on music loops

Jupyter Notebook 779 43 Updated May 11, 2017

A library for creating complex UpSet plots with ggplot2 geoms

Jupyter Notebook 543 38 Updated Sep 23, 2025

Interactive plotting for Python.

Jupyter Notebook 439 40 Updated May 28, 2025

IPython/Jupyter notebook module for Vega and Vega-Lite

Jupyter Notebook 386 67 Updated Apr 1, 2025

Genomic Pre-trained Network

Jupyter Notebook 316 48 Updated Dec 20, 2025

A Python package for exploring and analysing genetic variation data

Jupyter Notebook 306 54 Updated Dec 1, 2025

Methodology and code supporting the BuzzFeed News/BBC article, "The Tennis Racket," published Jan. 17, 2016.

Jupyter Notebook 250 62 Updated Aug 5, 2018

a toolkit for working with Oxford nanopore data

Jupyter Notebook 245 86 Updated Feb 6, 2023

Animated GIF patterns made in Python Matplotlib.

Jupyter Notebook 172 20 Updated Nov 12, 2022

Sequana: a set of Snakemake NGS pipelines

Jupyter Notebook 151 28 Updated Nov 15, 2025

Using a cell phone video to detect traffic speeds

Jupyter Notebook 149 17 Updated Mar 26, 2021

Execute a jupyter notebook, fast, without needing jupyter

Jupyter Notebook 137 13 Updated Dec 20, 2025

Rust bindings to minimap2 library

Jupyter Notebook 102 18 Updated Dec 15, 2025

Learn Julia via Examples

Jupyter Notebook 87 32 Updated Nov 26, 2016

a nose plugin for finding and running IPython notebooks as nose tests

Jupyter Notebook 80 9 Updated Feb 17, 2022

Plos in Computational Biology paper related with github for researchers, code, source and document

Jupyter Notebook 59 20 Updated Jul 14, 2016
Jupyter Notebook 59 28 Updated Jul 5, 2017

Tutorial Notebooks of BioJulia

Jupyter Notebook 38 8 Updated Mar 10, 2025

Response to blog post about Salmon

Jupyter Notebook 37 3 Updated Sep 3, 2017

Fusing image tiles with dask array's map_blocks

Jupyter Notebook 30 2 Updated Feb 27, 2024
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