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Gekkonid Scientific
- Naarm(Melbourne) AU/Tübingen, DE
- https://kdmurray.id.au
- @kdm9@genomic.social
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A latent text-to-image diffusion model
The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
Kalman Filter book using Jupyter Notebook. Focuses on building intuition and experience, not formal proofs. Includes Kalman filters,extended Kalman filters, unscented Kalman filters, particle filte…
Free online textbook of Jupyter notebooks for fast.ai Computational Linear Algebra course
From the basics to slightly more interesting applications of Tensorflow
Beaker Extensions for Jupyter Notebook
IPython Parallel: Interactive Parallel Computing in Python
Examples of matplotlib codes and plots
Principal Component Analysis on music loops
A library for creating complex UpSet plots with ggplot2 geoms
IPython/Jupyter notebook module for Vega and Vega-Lite
A Python package for exploring and analysing genetic variation data
Methodology and code supporting the BuzzFeed News/BBC article, "The Tennis Racket," published Jan. 17, 2016.
a toolkit for working with Oxford nanopore data
Animated GIF patterns made in Python Matplotlib.
Sequana: a set of Snakemake NGS pipelines
Using a cell phone video to detect traffic speeds
Execute a jupyter notebook, fast, without needing jupyter
Rust bindings to minimap2 library
Learn Julia via Examples
a nose plugin for finding and running IPython notebooks as nose tests
Plos in Computational Biology paper related with github for researchers, code, source and document
Response to blog post about Salmon
Fusing image tiles with dask array's map_blocks