Software for painlessly estimating average nucleotide diversity within and between populations

Where the WM model lives

NeEstimator V2.X estimates contemporary effective population size (Ne) using multi-locus diploid genotypes from population samples

Analysis scripts and datasets for Prata et al (2024)

Genetic Algorithm for Demographic Model Analysis

machine learning applications for dadi

Collection of Python scripts for parsing/analyses of RAD-seq data

A workflow for manually optimising the Diffusion Approximations for Demographic Inference (dadi) regarding population genomics analyses.

Vignette and research project developed under the AES ERC Networking Grant Scheme and the GSA workshop support scheme.

Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra

Aggregate results from bioinformatics analyses across many samples into a single report.

Introduction to bulk RNA-seq

Scripts for analysis used during the course

SPAGeDi: Spatial Pattern Analysis of Genetic Diversity

Gaudi - Raspberry Pi Cluster

Python library for loading and using triangular meshes.

Custom scripts for measuring coral reef microhabitat structural complexity using open3D and numpy.

Seascape genomics using distance-based Redundancy Analysis and distance-based Moran's Eigenvector Maps

Open-source bioinformatics components for Dash

Data Apps & Dashboards for Python. No JavaScript Required.

Python wrapper for CloudCompare

A CNN based image segmentation tool oriented to marine data analysis

This repository contains an R package with a number of population genomics tools, including a wrapper that will run an Fst-based genome-wide selection components analysis

Type II B RAD processing pipeline: raw reads through population analysis