Stars
A BioIO conversion tool for going between image formats
A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processing and multi-dimensional concatenation.
Browse, share, and publish OME-Zarr data
Reusable in-situ sequencing analysis workflow orchestrated by Nextflow
WebGL point cloud viewer for large datasets
core rendering canvas and data loading services for Vol-E volume viewer
AWS JavaScript S3 Explorer is a JavaScript application that uses AWS's JavaScript SDK and S3 APIs to make the contents of an S3 bucket easy to browse via a web browser.
nextflow DSL2 pipeline (leveraging /[raw2ometiff](https://github.com/glencoesoftware/raw2ometiff)) to convert almost any images t…
Tool for precise, interactive, fast and scalable FISH spot detection
Spark version of RS-FISH that can analyze large N5 volumes in a distributed fashion locally, on the cluster or in the cloud
A framework for easy application of established machine learning techniques on large, multi-dimensional images.
Basic example of using OME-Zarr in a Nextflow pipeline
CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.
Nextflow runs monitoring and organisation UI
EASI-FISH analysis pipeline for spatial transcriptomics
The swiss army knife of lossless video/audio editing
ColorMIP_Mask_Search plugin for Fiji
Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery
A DSL for data-driven computational pipelines
A minimalistic UI to conveniently upload and download files from AWS S3
JaneliaSciComp / pyktx
Forked from cmbruns/pyktxPython module for using KTX format OpenGL texture image files
JaneliaSciComp / ldap-jwt
Forked from lucianweber/ldap-jwtLightweight node.js based web service that provides user authentication against LDAP server (Active Directory / Windows network) credentials and returns a JSON Web Token.